Validate Prepared Input Files — validate_prepared

Performs comprehensive validation of prepared input files to ensure they are ready for use with geoExposeR.

Usage

validate_prepared_inputs(
  prob_file,
  conc_file,
  health_file,
  prob_id_col = "GEOID10",
  conc_id_col = "GEOID10",
  health_id_col = "FIPS",
  prob_data_cols = c("prob_C1", "prob_C2", "prob_C3"),
  fix_issues = FALSE
)

Arguments

prob_file: Path to the prepared probability data CSV file.
conc_file: Path to the prepared concentration lognormal parameters CSV file.
health_file: Path to the prepared health outcome file.
prob_id_col: Character. GEOID column in probability data. Default "GEOID10".
conc_id_col: Character. GEOID column in concentration data. Default "GEOID10".
health_id_col: Character. GEOID column in health data. Default "FIPS".
prob_data_cols: Character vector. Probability column names in probability data.
fix_issues: Logical. Whether to attempt automatic fixes for common issues. Default is FALSE.

Value

A list with validation results including:

valid: Logical indicating if all checks passed
issues: Character vector of identified issues
warnings: Character vector of warnings (non-critical)
summary: Summary statistics for each dataset

Examples

if (FALSE) { # \dontrun{
validation <- validate_prepared_inputs(
  prob_file = "prob_model.csv",
  conc_file = "conc_params.csv",
  health_file = "health_outcomes.txt"
)

if (validation$valid) {
  message("All validations passed!")
} else {
  cat("Issues found:\n")
  cat(paste(validation$issues, collapse = "\n"))
}
} # }